500 Error Page when Copying a Permission Scheme
Platform Notice: Data Center Only - This article only applies to Atlassian products on the Data Center platform.
Note that this KB was created for the Data Center version of the product. Data Center KBs for non-Data-Center-specific features may also work for Server versions of the product, however they have not been tested. Support for Server* products ended on February 15th 2024. If you are running a Server product, you can visit the Atlassian Server end of support announcement to review your migration options.
*Except Fisheye and Crucible
Summary
Symptoms
Copying a permission scheme results in a 500 Error page with this error:
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Referer URL: <JIRA_URL>/secure/admin/ViewPermissionSchemes.jspa
java.lang.NullPointerException
java.lang.NullPointerException
at com.google.common.base.Preconditions.checkNotNull(Preconditions.java:187)
at com.atlassian.jira.security.plugin.ProjectPermissionKey.<init>(ProjectPermissionKey.java:28)
at com.atlassian.jira.permission.DefaultPermissionSchemeManager.makeSchemeEntity(DefaultPermissionSchemeManager.java:407)
at com.atlassian.jira.scheme.AbstractSchemeManager.copyScheme(AbstractSchemeManager.java:669)
at com.atlassian.jira.scheme.AbstractSchemeManager.copyScheme(AbstractSchemeManager.java:708)
at com.atlassian.jira.scheme.AbstractCopyScheme.doExecute(AbstractCopyScheme.java:18)
...
Diagnosis
A copy of the permission scheme is still created, but certain groups/roles/users are removed from certain permissions.
Cause
There are corrupted entries in the database for the permission scheme. Running this SQL query will list them down:
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SELECT * FROM schemepermissions where permission_key is null and scheme is not null;
This is a sample result:

Project Roles 10002 and 10000 are assigned to permission -1 which has NULL permission key in scheme 0 (default permission scheme).
Solution
Resolution
⚠️ Back up JIRA first
Run this SQL query to delete the corrupted entries
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DELETE FROM schemepermissions where permission_key is null and scheme is not null;
Restart JIRA
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